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Illumina unveils first-of-its-kind spatial transcriptomics technology

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Illumina (NASDAQ: ILMN) has announced a groundbreaking spatial technology program that will enable researchers to map complex tissues and understand cellular behavior at unprecedented scale. The technology, planned for commercial release in 2026, offers nine times larger capture area and four times greater resolution than existing technologies.

The company is partnering with the Broad Institute on a Spatial Flagship Project to demonstrate the potential of large-scale spatial datasets. The technology will be compatible with Illumina NextSeq and NovaSeq sequencers and will be paired with a new software platform, Illumina Connected Multiomics (ICM), for multimodal analysis.

Early research applications have shown promising results in studies of pulmonary fibrosis, prostate cancer, and 3D reconstructions of mouse brains. The technology enables examination of spatial proximity of millions of cells per experiment, identification of rare cell populations, and improved statistical power.

Illumina (NASDAQ: ILMN) ha annunciato un programma innovativo di tecnologia spaziale che permetterà ai ricercatori di mappare tessuti complessi e comprendere il comportamento cellulare su scala senza precedenti. La tecnologia, prevista per il rilascio commerciale nel 2026, offre un area di cattura nove volte più grande e una risoluzione quattro volte maggiore rispetto alle tecnologie esistenti.

L'azienda sta collaborando con il Broad Institute in un progetto di bandiera spaziale per dimostrare il potenziale dei dataset spaziali su larga scala. La tecnologia sarà compatibile con i sequenziatori Illumina NextSeq e NovaSeq e sarà abbinata a una nuova piattaforma software, Illumina Connected Multiomics (ICM), per analisi multimodali.

Le prime applicazioni di ricerca hanno mostrato risultati promettenti in studi sulla fibrosi polmonare, sul cancro alla prostata e nelle ricostruzioni 3D dei cervelli dei topi. La tecnologia consente l'esame della prossimità spaziale di milioni di cellule per esperimento, l'identificazione di popolazioni cellulari rare e un miglioramento della potenza statistica.

Illumina (NASDAQ: ILMN) ha anunciado un programa innovador de tecnología espacial que permitirá a los investigadores mapear tejidos complejos y comprender el comportamiento celular a una escala sin precedentes. La tecnología, que se planea lanzar comercialmente en 2026, ofrece un área de captura nueve veces más grande y una resolución cuatro veces mayor que las tecnologías existentes.

La empresa se está asociando con el Broad Institute en un Proyecto Flagship Espacial para demostrar el potencial de los conjuntos de datos espaciales a gran escala. La tecnología será compatible con los secuenciadores Illumina NextSeq y NovaSeq y se emparejará con una nueva plataforma de software, Illumina Connected Multiomics (ICM), para análisis multimodales.

Las aplicaciones de investigación tempranas han mostrado resultados prometedores en estudios de fibrosis pulmonar, cáncer de próstata y reconstrucciones en 3D de cerebros de ratón. La tecnología permite examinar la proximidad espacial de millones de células por experimento, identificar poblaciones celulares raras y mejorar el poder estadístico.

Illumina (NASDAQ: ILMN)는 연구자들이 복잡한 조직을 매핑하고 전례 없는 규모로 세포 행동을 이해할 수 있도록 하는 혁신적인 공간 기술 프로그램을 발표했습니다. 2026년에 상용 출시될 예정인 이 기술은 기존 기술보다 아홉 배 큰 캡처 영역과 네 배 높은 해상도를 제공합니다.

회사는 Broad Institute와 협력하여 대규모 공간 데이터 세트의 잠재력을 입증하는 공간 주력 프로젝트를 진행하고 있습니다. 이 기술은 Illumina NextSeq 및 NovaSeq 시퀀서와 호환되며, Illumina Connected Multiomics (ICM)라는 새로운 소프트웨어 플랫폼과 결합되어 다중 모드 분석을 수행합니다.

초기 연구 응용 프로그램은 폐 섬유증, 전립선암 및 쥐 뇌의 3D 재구성 연구에서 유망한 결과를 보여주었습니다. 이 기술은 실험당 수백만 개의 세포의 공간적 근접성을 조사하고, 희귀 세포 집단을 식별하며, 통계적 힘을 향상시킬 수 있게 합니다.

Illumina (NASDAQ: ILMN) a annoncé un programme de technologie spatiale révolutionnaire qui permettra aux chercheurs de cartographier des tissus complexes et de comprendre le comportement cellulaire à une échelle sans précédent. La technologie, prévue pour une sortie commerciale en 2026, offre une zone de capture neuf fois plus grande et une résolution quatre fois supérieure à celle des technologies existantes.

La société s'associe à l'Institut Broad dans un projet phare spatial pour démontrer le potentiel des ensembles de données spatiales à grande échelle. La technologie sera compatible avec les séquenceurs Illumina NextSeq et NovaSeq et sera associée à une nouvelle plateforme logicielle, Illumina Connected Multiomics (ICM), pour une analyse multimodale.

Les premières applications de recherche ont montré des résultats prometteurs dans des études sur la fibrose pulmonaire, le cancer de la prostate et les reconstructions en 3D des cerveaux de souris. La technologie permet d'examiner la proximité spatiale de millions de cellules par expérience, d'identifier des populations cellulaires rares et d'améliorer la puissance statistique.

Illumina (NASDAQ: ILMN) hat ein bahnbrechendes Programm für räumliche Technologie angekündigt, das es Forschern ermöglichen wird, komplexe Gewebe zu kartieren und das Zellverhalten in bisher unerreichter Größenordnung zu verstehen. Die Technologie, die für die kommerzielle Einführung im Jahr 2026 geplant ist, bietet ein neunmal größeres Erfassungsgebiet und eine viermal höhere Auflösung als bestehende Technologien.

Das Unternehmen arbeitet mit dem Broad Institute an einem räumlichen Flagship-Projekt zusammen, um das Potenzial großer räumlicher Datensätze zu demonstrieren. Die Technologie wird mit den Illumina NextSeq- und NovaSeq-Sequenzierern kompatibel sein und wird mit einer neuen Softwareplattform, Illumina Connected Multiomics (ICM), für multimodale Analysen kombiniert.

Frühe Forschungsanwendungen haben vielversprechende Ergebnisse in Studien zu Lungenfibrose, Prostatakrebs und 3D-Rekonstruktionen von Mäusehirnen gezeigt. Die Technologie ermöglicht die Untersuchung der räumlichen Nähe von Millionen von Zellen pro Experiment, die Identifizierung seltener Zellpopulationen und eine verbesserte statistische Power.

Positive
  • New spatial technology offers 9x larger capture area and 4x greater resolution than existing technologies
  • Technology will be compatible with existing Illumina sequencers, reducing costs for large-scale programs
  • Partnership with prestigious Broad Institute enhances market credibility
  • Early research applications demonstrate successful use in multiple fields
Negative
  • Commercial release not until 2026, indicating long wait for revenue generation
  • Reliance on third-party suppliers for critical components poses supply chain risks
  • Success depends on customer acceptance of new products

Insights

This groundbreaking spatial transcriptomics technology represents a pivotal strategic move for Illumina, positioning the company to capture a larger share of the rapidly growing spatial biology market, estimated to reach $2 billion by 2026. The technology's superior capabilities - including 9x larger capture area and 4x greater resolution - address critical limitations in current spatial analysis methods, potentially accelerating adoption in both academic and clinical research settings.

The collaboration with the prestigious Broad Institute serves multiple strategic purposes: it validates the technology's capabilities, provides early access to influential researchers, and establishes a pipeline for external research groups. This approach mirrors successful product launches in the life sciences sector, where early adoption by leading institutions often drives broader market acceptance.

The 2026 commercial release timeline is particularly significant, as it allows Illumina to refine the technology while building a strong pipeline of research applications. The compatibility with existing NextSeq and NovaSeq platforms is strategically crucial, as it leverages Illumina's installed base and reduces barriers to adoption. The integrated software solution (ICM) adds another recurring revenue stream through data analysis services.

Early research applications in pulmonary fibrosis, prostate cancer, and brain mapping demonstrate the technology's versatility and potential to generate high-value datasets. The ability to analyze millions of cells per experiment at reduced costs could significantly expand the addressable market by making spatial analysis more accessible to a broader range of researchers.

Broad Institute to collaborate on flagship project tapping Illumina's new spatial technology

At AGBT, customers will present data demonstrating unparalleled scale and sensitivity in research spanning pulmonary fibrosis, prostate cancer, and 3D reconstructions of mouse brains

Company expands software portfolio to decode multimodal data with Illumina Connected Multiomics

SAN DIEGO, Feb. 19, 2025 /PRNewswire/ -- Illumina, Inc. (NASDAQ: ILMN) today announced a new spatial technology program that will empower researchers to map complex tissues and understand cellular behavior at an unprecedented scale. Enabled on Illumina sequencers and a new multimodal analysis platform, Illumina's spatial technology delivers unbiased whole-transcriptome profiling with cellular resolution and high sensitivity. These capabilities are expected to drive expansion of spatial research and unlock applications and experiments that were previously not possible.

Details and early access customer data will be presented next week during Illumina's Gold Sponsor Workshop at the Advances in Genome Biology and Technology (AGBT) General Meeting in Florida.

"Spatial transcriptomics opens entirely new pathways to gain crucial insight into the cellular function of organisms," said Steve Barnard, PhD, chief technology officer of Illumina. "Illumina spatial technology will deliver another complete workflow on our leading sequencing platforms. With this innovation, we are setting a new bar that will drive the next wave of scientific discoveries and unlock a deeper understanding of biology—from the impact of cell interactions on disease to the mechanisms needed to solve them."

Spatial transcriptomics allows researchers to explore biological interactions at the cellular level. For instance, through "cell atlasing," which maps the detailed arrangement of cells, researchers can gain novel insights into complex tissue structures that affect disease. This enables discovery in areas ranging from tumor microenvironments to disease pathways, neurobiology, immuno-oncology, and more.

Planned for commercial release in 2026, Illumina spatial technology will allow researchers to examine the spatial proximity of millions of cells per experiment, enabled by a capture area nine times larger than existing technologies, and with four times greater resolution. By allowing researchers to analyze more cells in a single spatial experiment, the technology provides the ability to identify rare cell populations and improves statistical power for greater confidence in findings. As a complete end-to-end solution, it will also deliver the highest value for single-cell and spatial researchers at a more affordable price point. The spatial solution surpasses industry standards for scale and accuracy, and is compatible with Illumina NextSeq and NovaSeq sequencers, thereby materially reducing the cost of running large-scale programs.

New multimodal analysis platform delivers powerful insights, visualizations

The spatial technology will be paired with a new software platform, Illumina Connected Multiomics (ICM). ICM is a multimodal analysis platform that makes it easy for researchers to visualize the results of spatial experiments. ICM helps them navigate, explore, and analyze multiomic data sets, ultimately driving deeper insights from biological data. Its intuitive design and seamless integration with the sequencing workflow will allow any scientist to generate powerful statistical insights and interactive visualizations to decode multiple complex modalities, such as genomic, proteomic, spatial transcriptomic, epigenetic, and single-cell data, all in the same platform.  

"Illumina Connected Multiomics will unlock a seamless workflow, from sample to analysis, providing the powerful visual and statistical analysis tools needed to accelerate the next wave of life sciences breakthroughs," said Rami Mehio, head of global software and informatics at Illumina.

Broad Institute and Illumina announce collaboration on Spatial Flagship Project

The Broad Institute and Illumina today announced their intent to collaborate on a groundbreaking Spatial Flagship Project, leveraging Illumina's cutting-edge spatial technology. The project will be conducted at the Broad Institute's Spatial Technology Platform (STP), with sequencing performed at Broad Clinical Labs.

Leveraging Illumina's advanced spatial technology, which provides an expansive 50 mm by 15 mm imaging area for enhanced flexibility, sensitivity, resolution, and unbiased whole-transcriptome discovery, the Spatial Flagship Project seeks to demonstrate the transformative potential of large-scale spatial datasets. This collaboration will generate large-scale, coordinated data from hundreds of samples provided by Broad Institute principal investigators, with the goal of advancing discovery in the spatial technology market. Additionally, the project will offer early access to Illumina's spatial technology to external research groups through the Broad Institute's STP pipeline, fostering broader engagement and accelerating innovation.

Illumina spatial technology is already driving real-world breakthroughs

During Illumina's workshop at AGBT, researchers from the Broad Institute, St. Jude Children's Research Hospital, and TGen will share data on real-world advances made possible by the new spatial technology.

  • Pulmonary fibrosis research: Nicholas Banovich, PhD, associate director of the Division of Bioinnovation and Genome Sciences and the Center for Spatial Multi-Omics at TGen, will present his findings that underscore the power of high-resolution spatial transcriptomics to uncover novel disease mechanisms in pulmonary fibrosis.

    "The scale and sensitivity of Illumina's new spatial technology is enabling us to study the whole transcriptome across large tissue sections," Banovich said. "Our early analyses with this technology identified and localized molecular dysregulation associated with active epithelial cell remodeling in pulmonary fibrosis. We believe this will aid in identifying therapeutic targets which can be used to stop or slow the progression of disease."

    Banovich's poster, "Characterizing alveolar dysregulation in pulmonary fibrosis using the Illumina spatial technology," will be presented at AGBT.

  • 3D tissue reconstruction: Michal Lipinski, PhD, of the Broad Institute, led spatial research to build 3D reconstructions of mouse brains, achieving breakthroughs in the breadth of data achievable from 10 experiments on one slide, which has never been done before. The team's abstract concludes, "the experiments show that the new Illumina spatial technology can provide a highly efficient platform for large scale experiments, with further improvement in spatial resolution."

    Lipinski said: "Large-scale and unbiased whole-transcriptome capture are the ideal components of a discovery platform capable of finding novel marker genes and simultaneously validating them across multiple tissue sections within a single experiment."

    Lipinski's talk, "Large continuous area of spatial transcriptome profiling allows for efficient tissue characterization with high resolution and limited batch effect," will be presented at AGBT on Tuesday, February 25, 7:30–7:50 PM ET.

  • Prostate cancer research: Jasmine Plummer, PhD, director of the Center for Spatial Omics at St. Jude's Children's Research Hospital, will present her research demonstrating how high-resolution spatial sequencing reveals changes in a prostate tumor environment.

    "
    Spatial omics provides the blueprint of the tissue, the pavement of the extracellular matrix, and the architecture of the cell," said Plummer. "This visibility can provide significant insight into cancer progression."

    "With this new technology we were able to profile millions of cells on just two substrates and found biomarkers that are not included in targeted approaches," Plummer continued. "This improved transcript coverage allows the ability to drive rare cell type analyses, and these rare cell types were found to correlate to disease states within prostate cancer subgroups."

  • Maternal brain research: Darren Segale, PhD, senior director of scientific research at Illumina, will present a talk at AGBT on Tuesday, February 25, 8:30–8:50 PM ET, titled "A high-resolution spatial transcriptomic map of the pregnant mouse brain reveals regionally distinct gene expression regulation related to maternal behavior."

Overall, the solution will remove barriers to spatial research, providing researchers with a better understanding of the underlying biology of tissue samples and more confidence in the results of their experiments.

Illumina's Gold Sponsor Workshop will be held February 24, 12–1:30 PM ET. Illumina will demonstrate its end-to-end workflows throughout the AGBT conference in Osprey Lounge 1.

Use of forward-looking statements

This release may contain forward-looking statements that involve risks and uncertainties. Among the important factors to which our business is subject that could cause actual results to differ materially from those in any forward-looking statements are: (i) challenges inherent in developing and launching new products and services, including modifying and scaling manufacturing operations, and reliance on third-party suppliers for critical components; (ii) our ability to manufacture robust instrumentation and consumables; and (iii) the acceptance by customers of our newly launched products, which may or may not meet our and their expectations, together with other factors detailed in our filings with the Securities and Exchange Commission, including our most recent filings on Forms 10-K and 10-Q, or in information disclosed in public conference calls, the date and time of which are released beforehand. We undertake no obligation, and do not intend, to update these forward-looking statements, to review or confirm analysts' expectations, or to provide interim reports or updates on the progress of the current quarter.

About Illumina

Illumina is improving human health by unlocking the power of the genome. Our focus on innovation has established us as a global leader in DNA sequencing and array-based technologies, serving customers in the research, clinical, and applied markets. Our products are used for applications in the life sciences, oncology, reproductive health, agriculture, and other emerging segments. To learn more, visit illumina.com and connect with us on X, Facebook, LinkedIn, Instagram, TikTok, and YouTube.

Contacts

Investors:
Salli Schwartz
858-291-6421
IR@illumina.com

Media:
Christine Douglass
PR@illumina.com

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SOURCE Illumina, Inc.

FAQ

When will Illumina (ILMN) launch its new spatial technology commercially?

Illumina plans to commercially release its new spatial technology in 2026.

What are the key advantages of ILMN's new spatial technology over existing solutions?

The technology offers a capture area nine times larger than existing technologies, four times greater resolution, and can examine millions of cells per experiment.

How will ILMN's new spatial technology integrate with existing systems?

The technology will be compatible with Illumina NextSeq and NovaSeq sequencers and will integrate with the new Illumina Connected Multiomics (ICM) software platform.

What research areas has ILMN's spatial technology already shown success in?

The technology has shown promising results in pulmonary fibrosis research, prostate cancer studies, and 3D reconstructions of mouse brains.

What is the significance of ILMN's partnership with the Broad Institute?

The partnership will demonstrate the potential of large-scale spatial datasets and provide early access to external research groups through Broad Institute's STP pipeline.

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