Company Description
Bionano Genomics, Inc. is a life sciences instrumentation company that develops and markets genome analysis solutions for genetic and cytogenetic research, clinical diagnostics, and drug discovery applications. The company's mission centers on transforming how the scientific and medical communities visualize and analyze genomic information through advanced optical mapping technologies.
Core Technology and Products
The company's primary technology platform is Optical Genome Mapping (OGM), a genome analysis method that provides ultra-high-resolution detection of structural variations (SVs) in DNA. Unlike traditional sequencing approaches that read the linear sequence of DNA bases, OGM visualizes the physical structure of chromosomes and identifies large-scale genomic alterations including deletions, duplications, inversions, translocations, and copy number variations. This technology addresses a critical gap in genomic analysis, as structural variations play significant roles in human disease but are frequently missed by conventional cytogenetic and molecular testing methods.
Bionano markets two primary instrument systems for OGM analysis. The Saphyr system is an automated sample-to-result solution designed for research and clinical laboratories seeking genome-wide structural variation analysis. The Stratys system represents the company's next-generation platform, offering enhanced throughput and workflow efficiency for high-volume testing environments. Both systems utilize proprietary consumables including Saphyr Chips for molecule imaging, DNA labeling kits for sample preparation, and Bionano Prep Kits for DNA extraction and quality control.
The company also develops VIA software, a platform-agnostic genome analysis solution that enables laboratories to visualize, interpret, and report genomic data from multiple technology platforms. This software provides bioinformatics tools for variant detection, annotation, and clinical interpretation, streamlining the analytical workflow for both research and diagnostic applications.
Additionally, Bionano offers nucleic acid extraction and purification solutions utilizing Isotachophoresis (ITP) technology. The Ionic purification system leverages this electrokinetic separation method to isolate high-molecular-weight DNA with superior purity and integrity compared to traditional extraction approaches, which is particularly valuable for applications requiring long DNA molecules.
Clinical Diagnostic Services
Through its Bionano Laboratories subsidiary, the company provides CLIA-certified and CAP-accredited clinical diagnostic testing services. This laboratory division offers OGM-based genetic testing for patients with suspected genetic conditions, enabling clinicians to order testing directly without needing to invest in instrumentation or develop in-house expertise.
Bionano Laboratories evolved from the acquisition of Lineagen, Inc., a specialized genetic testing laboratory that focused on neurodevelopmental disorders including autism spectrum disorders, intellectual disabilities, and developmental delays. The integration of Lineagen's clinical expertise with Bionano's OGM technology created an expanded testing menu addressing both constitutional genetic disorders and hematologic malignancies.
The diagnostic services portfolio includes whole-genome OGM analysis for constitutional disorders, targeted OGM testing for cancer cytogenetics, and specialized panels for specific disease categories. The laboratory supports healthcare providers with genetic counseling resources, test interpretation assistance, and patient support services throughout the diagnostic journey.
Clinical Applications
Hematologic Malignancies: OGM technology has demonstrated particular utility in blood cancers, where chromosomal aberrations serve as critical diagnostic markers, prognostic indicators, and therapeutic targets. The technology can detect all classes of chromosomal abnormalities in a single genome-wide assay, providing substantially higher resolution than traditional karyotyping while capturing variants that fluorescence in situ hybridization (FISH) and next-generation sequencing (NGS) methods frequently miss. Clinical studies have shown that OGM identifies clinically actionable variants and pathogenic findings in cases that appeared normal or inconclusive using conventional cytogenetic testing.
Constitutional Genetic Disorders: For inherited conditions including developmental delay, intellectual disability, autism spectrum disorders, congenital anomalies, and other genetic syndromes, OGM offers advantages over chromosomal microarray analysis and NGS panels. The technology excels at detecting balanced rearrangements, complex structural variations, and variants in genomic regions that are difficult to assess using other methods. This capability is particularly valuable for patients who have undergone multiple rounds of genetic testing without achieving a molecular diagnosis.
Reproductive Genetics: OGM applications in prenatal and preimplantation genetic testing enable detection of chromosomal abnormalities associated with pregnancy loss, fetal anomalies, and inherited disorders. The technology provides comprehensive genome-wide analysis that can identify both numerical and structural chromosome abnormalities in a single assay.
Solid Tumor Oncology: While hematologic applications represent the most established use case, research applications of OGM extend to solid tumor analysis for characterizing chromosomal rearrangements, gene fusions, and genomic instability patterns that contribute to cancer development and therapeutic resistance.
Reimbursement and Market Access
The establishment of Category I Current Procedural Terminology (CPT) codes by the American Medical Association represents a significant milestone for clinical OGM adoption. These codes enable standardized billing and reimbursement for OGM testing in both hematologic malignancy and constitutional disorder applications, facilitating integration into routine clinical practice and improving access for patients covered by Medicare, Medicaid, and private insurance programs.
Global Reach and Market Strategy
Bionano operates across the Americas, Europe, Middle East, Africa, and Asia Pacific regions, serving academic research institutions, clinical reference laboratories, hospital-based cytogenetics departments, pharmaceutical companies, and contract research organizations. The company employs a direct sales force in key markets while utilizing distribution partners for territories requiring localized support and regulatory expertise.
The commercial strategy emphasizes driving utilization of installed instruments rather than solely focusing on system placements. This approach prioritizes customer success, application development, and demonstration of clinical utility to encourage routine adoption of OGM testing. The company provides extensive training, technical support, and applications expertise to help laboratories implement OGM into their testing workflows and achieve meaningful patient impact.
Technology Advantages
OGM technology offers several key differentiators compared to conventional cytogenetic and molecular genetic testing approaches. The method provides genome-wide analysis without requiring prior knowledge of target regions, enabling unbiased variant discovery. Resolution substantially exceeds traditional karyotyping (approximately 10,000-fold higher) while maintaining the ability to assess the entire genome rather than pre-selected loci as with FISH. Unlike NGS-based structural variant detection, which faces technical challenges with repetitive sequences, complex rearrangements, and large variants, OGM directly visualizes the physical structure of DNA molecules, providing more reliable detection and characterization of structural abnormalities.
The single-assay workflow consolidates multiple traditional testing methods, potentially reducing time to diagnosis, laboratory complexity, and overall testing costs. Automated data analysis and standardized reporting features support implementation in clinical diagnostic settings where reproducibility and regulatory compliance are essential.
Research and Development
The company maintains active research and development programs focused on expanding OGM applications, enhancing instrument performance, advancing software capabilities, and developing novel reagents and consumables. Collaborative research partnerships with academic institutions, medical centers, and industry organizations generate clinical evidence supporting OGM utility across diverse applications and contribute to scientific understanding of structural variation in human health and disease.
Publications in peer-reviewed medical and scientific journals document OGM performance characteristics, clinical validation studies, and comparative analyses versus standard-of-care testing methods. This growing body of evidence supports clinical adoption, influences practice guidelines, and informs reimbursement policy decisions.