NanoString's GeoMx Digital Spatial Profiler Used to Explore Loss of Smell Associated with COVID-19
NanoString Technologies (NASDAQ: NSTG) recently announced a significant peer-reviewed study published in Cell, exploring anosmia, a COVID-19 symptom. The research analyzed 70 patient samples to determine the impact of SARS-CoV-2 on olfactory neurons using the GeoMx Digital Spatial Profiler. Findings revealed that while the virus does not directly infect olfactory sensory neurons, high viral loads reduce gene expression in neighboring cells. This research underscores the utility of spatial transcriptomics in understanding COVID-19's effects, marking a notable advancement in the field of life sciences.
- Publication in a prestigious journal Cell enhances credibility.
- Research using GeoMx DSP demonstrates innovative application in COVID-19 studies.
- Findings provide insights into anosmia, addressing a critical symptom in COVID-19 patients.
- None.
Publication in the Journal Cell Reveals SARS-CoV-2 Does Not Appear to Affect Expression of Odorant Receptor Genes
The paper Khan et al., "Visualizing in deceased COVID-19 patients how SARS-CoV-2 attacks the respiratory and olfactory mucosae but spares the olfactory bulb", was led by Peter Mombaerts, M.D., Ph.D., at the Max Planck Research Unit of Neurogenetics in
Using a novel tissue collection procedure, the research team examined samples from 70 COVID-19 patients, enabling the team to study the virus while it is still replicating. After establishing that SARS-CoV-2 does not infect olfactory sensory neurons, the researchers used the GeoMx DSP to explore whether olfactory sensory neurons are indirectly affected by other nearby cells that are infected. The researchers compared whole-transcriptome expression patterns between adjacent regions of nasal cavity tissues with low and high viral load. This spatial transcriptomics approach confirmed that areas with a high viral load had reduced expression of genes that were known to be specifically expressed in sustentacular cells within the olfactory epithelium, but showed no changes in odorant receptor gene expression in nearby olfactory sensory neurons.
“Spatial context is key. The olfactory epitheliu is made up of an archipelago of islands scattered amidst the respiratory epithelium, so taking a bulk RNA sequencing approach would not have been helpful,” said Peter Mombaerts, M.D., Ph.D., principal investigator. “The GeoMx DSP allowed us to compare specific regions of the olfactory epithelium with varying viral loads. These regions can be regarded as tiny, directed biopsies.”
“During the COVID-19 pandemic, spatially-resolved whole transcriptome expression has been invaluable for scientists to understand the effects this deadly virus has on specific regions within organs,” said
The GeoMx DSP enables researchers to rapidly and quantitatively characterize tissue morphology with a high-throughput, high-plex RNA and protein profiling system that preserves precious samples for future analyses.
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